Research mentors and projects for the 2014 UNF REU Program 

Check back regularly.  More REU mentors will be added shortly!

 

 


Comparative Physiology   

    

  Dr. Greg Ahearn, Comparative Physiology, Crustacean, Teleost, and Elasmobranch Digestive Physiology


Dr. Ahearn’s research is concerned with the description of membrane transport processes allowing the movements of ions and organic molecules such as glucose and amino acids into and across gastrointestinal organs of invertebrates and vertebrates.  They use a combination of radioisotopes and gas chromatography to examine the functions of digestive tract organs in these animals.  Undergraduates that conduct research in this program will investigate radiolabelled nutrient transport across perfused lobster or shrimp intestine, or uptake of these molecules by purified membrane vesicles generated from shark spiral intestine, a heretofore largely unstudied digestive organ in elasmobranchs.  Students will learn the use of radioisotopes in biological research, the analysis of data collected with modern curve-fitting and statistical software, and the preparation of data for publication in national journals.

     



Fisheries Biology
  Mr. Russell Brodie, Florida Fish and Wildlife Conservation Commission, Fisheries Biology

 

The Florida Fish and Wildlife Conservation Commission’s (FWC) Fisheries-Independent Monitoring (FIM) program monitors fisheries resources in the St. Marys, Nassau, and lower St. Johns Rivers.  The FIM program is designed to provide scientists and fisheries managers with data on the relative abundance, distribution, recruitment, size structure, and habitat associations of estuarine fishes and provides a unique source of information on economically valuable species as well as on many poorly understood non-game species that may influence fisheries or may be important ecological indicators.  This type of multi-species, multi-habitat, long-term monitoring program is extremely valuable for documenting ecosystem changes, evaluating the effects of natural and anthropogenic disturbances, and making management decisions.  Students working with the FIM program will have the opportunity to participate in monthly field sampling events, perform QA/QC fish identifications, collect biological samples for research projects, and help to analyze fisheries data on different species important to the local area.

     

Ecology and Biology of Sharks and Rays in north Florida waters 

 

Dr. Jim Gelsleichter, Shark Biology, Physiology, and Ecotoxicology

 

My research focuses on the ecology of sharks and rays in northeast Florida waters.  I also conduct research on the physiological factors that regulate shark reproduction, particularly hormones, and the effects that environmental pollution can have on shark reproduction and overall health.  Undergraduates that conduct research in my program participate in the UNF Shark Biology Program’s annual field survey, which examines the species composition, abundance, distribution, and movement patterns of shark and ray populations in northeast Florida waters.  The goal of this research is to identify areas that are in need of special consideration and, in some cases, protection because they serve as essential habitat for ecologically and economically important and federally regulated shark species.  Students also conduct laboratory research geared towards identifying the roles of hormones in shark reproduction and the effects of pollutant exposure on sharks residing in contaminated habitats including areas of the Gulf coast impacted by the Deepwater Horizon Oil Spill. 

     

Behavioral Ecology of Estuarine Bottlenose Dolphins  

 

Dr. Quincy Gibson, Marine Mammal Behavioral Ecology and Social Development 

 

My lab conducts weekly boat-based photo-identification and behavioral surveys of bottlenose dolphins in the St. Johns River and is currently addressing a number of research questions related to population dynamics and behavioral complexity.  Our data indicate that the St. Johns River provides important year-round habitat for estuarine bottlenose dolphins.  However, given the river’s metropolitan location, these resident dolphins are at a high risk of anthropogenic disturbance.  Throughout our study, a number of individual dolphins have developed skin lesions, which can be an indication of disease and may be related to anthropogenic factors. Long-term photographic documentation of these lesions can be used as a non-invasive tool to assess the health status of the population.  REU students working in my lab will conduct photographic analysis of skin lesions on wild bottlenose dolphins.  This will involve categorizing skin lesions by type and severity, and examining potential effects of season, location, and residency patterns on lesion prevalence. Students will spend at least one full day per week assisting with data collection out on our research vessel on the St. Johns River.  The remaining time will be spent processing and analyzing data in a computer lab.

     

Evolutionary Genetics, Speciation, Invasive Species Biology

 

Dr. Matt Gilg, Evolutionary Genetics, Speciation, Invasive Species Biology 

 

Students working with me will have the opportunity to work on one of two research projects: 

 

Selection on the gamete recognition protein M7 lysin  

 

The first involves studying the evolution of barriers to reproduction between two sub-species of mussels (Mytilus edulis and M. galloprovincialis) from the Atlantic coast of Europe.  I am interested in how proteins involved in fertilization diverge and how this divergence affects the ability of males of one species fertilize the eggs of a second species.  A student working on this project will use molecular genetic techniques such as PCR and restriction enzyme digests to analyze a gene involved in fertilization called M7 lysin.  Samples of recently settled mussel larvae will be analyzed to test for genetic differences among distinct cohorts of larvae.

 

Human mediated mechanisms of dispersal of the invasive green mussel

The second research project focuses on a local invasive species of mussel (the green mussel, Perna viridis) that is native to the Indo-Pacific.  I am interested in factors that may affect the spread of this species to other parts of the United States.  One possibility is that dredging equipment used by the U.S. Army Corps of Engineers may act to spread invasive marine species such as the green mussel when it is moved from one location to another.  It is also possible that spoil islands that are made from the relocation of dredged material are hot spots for the establishment of invasive species allowing them to increase in population size and spread.  Students working on this project will be conducting field surveys of spoil islands of various ages and dredging equipment in the local area to determine the likelihood of these contributing to the spread of green mussels and other invasive species.

     

Reproductive Ecology and Impact of Invasive Species

 

Dr. Eric Johnson, Population dynamics and quantitative fisheries ecology 

 

Students working in my research program will have the opportunity to work on one of two research projects: 

 

Reproductive ecology of the blue crab in the St. Johns River: A comparative approach:

Charles Darwin observed that males of many species contributed little to the sexual partnership; in other words sperm were cheap and eggs were expensive.  This basic evolutionary concept has persisted through time and is the dominant paradigm in modern fisheries management where the overwhelming goal is the protection of mature females and the potential effect of males on reproductive success is ignored.  However, in numerous species, the ability of females to fertilize their eggs is limited by the amount and quality of sperm that is contributed by males during mating.  In particular, the unique characteristics of blue crab life history and the intense fisheries for this species make them an ideal model system for testing hypotheses related to sperm limitation.  The overall goal of the project that a REU student will participate in is to fill key data gaps on basic blue crab reproductive ecology for the St. Johns River and compare the results to ongoing studies in Chesapeake Bay, a system with very different biological, environmental, and human forcing factors.  Specifically, the results will provide important biological data necessary for effective management of blue crabs in the St. Johns River, and generate a strong comparative data set for ongoing tests of sperm limitation in Chesapeake Bay.

 

Food web impacts of invasive lionfish in nearshore coastal ecosystems of Florida

Introductions of invasive species pose a serious threat to native ecosystems worldwide.  Once established, invasives can precipitate far reaching and often unpredictable effects in native coastal ecosystems through predation, competition for prey resources or habitat, and can ultimately lead to declines in the abundance, diversity or extinction of native biota.  Two closely related species of lionfish native to the Indo-Pacific were introduced to Florida’s east coast and have expanded rapidly throughout the marine waters of the western Atlantic Ocean and Caribbean Sea.  Although now common on marine coral reefs, lionfish have only recently been observed within estuaries, in particular residing in mangrove and seagrass ecosystems, with unknown, but potentially substantial detrimental effects for many economically important commercial and recreational fishes that utilize these habitats as juvenile nurseries.  In a second project that REU students can participate in, I propose to investigate the food web impacts of invasive lionfish in Florida estuaries with particular focus on these recently invaded estuarine ecosystems using both traditional and novel approaches.  This research will enable fishery biologists to more effectively manage this established species, help predict the impact of lionfish on economically important native fishes, and provide key data for ecosystem-based fisheries management which relies critically on knowledge about trophic dynamics and food web structure.

     

 Competition Among Marine Microorganisms

   

 

Dr. Amy Lane, Competition as an activator of natural product production among marine microorganisms

 Microorganisms are remarkable chemists, producing a wealth of organic molecules with highly diverse chemical structures.  These natural products have immense demonstrated applicability as human drugs, and more than half of marketed drugs can be traced to a natural origin.  Remarkably, recent studies have shown that more than 10% of the genetic material of some marine microorganisms encodes enzymes responsible for catalyzing reactions that yield natural products.  However, the majority of these genes are not expressed (silent) under typical laboratory cultivation conditions, which focus on culturing single, pure microorganisms in a handful of media types.  Hence, a wealth of nature’s genetically encoded chemical potential remains untapped.  One plausible explanation for the silence of natural product genes is that compound production evolved as a response to microbial competition, with natural products acting as on-demand weapons to overcome competitors.  In this project, the student will explore the central hypothesis that actual and/or simulated competitive interactions between marine microorganisms activate the production of natural products, which may serve unique ecological functions.  In addressing this central hypothesis, the student will learn a variety of interdisciplinary scientific skills in molecular biology, microbiology, biochemistry, and organic chemistry.  


 

     


Biological Monitoring
  Dr. Nikki Dix, Guana-Tolomata-Matanzas Research Reserve, Biological Monitoring

Students interning at the Guana Tolomato Matanzas National Estuarine Research Reserve (GTM NERR) will work out of our Ponte Vedra office and contribute toward the NERR System-Wide Monitoring Program, a nationwide effort to measure change in estuaries. Students have the opportunity to be involved in field sampling and data analysis related to monitoring either salt marshes or oysters. The salt marsh monitoring project is designed to investigate how changes in vegetation and sediment elevation relate to various environmental parameters such as climate and water quality. Oyster research will involve relating metrics of population structure to driving forces such as predation, harvesting pressure, or environmental factors. Salt marshes and oyster reefs are two of the dominant habitats within the GTMNERR and throughout the southeastern United States. Hence, ecological research within these habitats will provide much needed information for their management and conservation.

     

 

 

 

 

 

 

 

 

 

 

 

 

 

Marine

Mammology

  Dr. Julie Richmond, Marine Mammalogy 

 

REU students working in my research program may be involved in one of the two following projects.  In both cases, REU students will complete laboratory based projecst that may be presented at an international scientific meeting.  Participating students will learn and become proficient with laboratory assay techniques including radioimmunoassays, western ligand blots, spectrophotometric assays and other basic molecular biology techniques. 

Milk vs. Formula: Examination of Metabolic Hormone Profile in Common Pinniped Rehabilitation Formulas

 

Many rehabilitation facilities, zoos, and aquaria in the United States, Canada, and Europe care for injured or abandoned pinniped (seal and sea lion) pups.  While rehabilitation is common, success rates are low with 50-70% mortality. Nutrient intake is an essential component to rehabilitation success.  First year survival of pinniped pups is positively correlated to body mass.  In the wild, seal pups nurse on energy dense, lipid rich milk (60% lipid) that results in an average daily gain (ADG) of 5 to 9% of body mass per day.  Rehabilitated pups are fed via esophageal feeding tube with formula that maximizes lipid and energy content, on the assumption that these are key parameters.  However, to our knowledge no attempt has been made to evaluate and compare the endocrine contribution of natural pinniped milk with commonly used rehabilitation formulas.  In contrast to formula fed pinnipeds, human infants fed formula grow at a faster rate than breast fed infants.  Human formula contains several bioactive hormones in greater quantities than breast milk including increased ghrelin, and insulin-like growth factor.  This study will compare metabolic hormone profiles in pinniped rehabilitation formulas with milk from free-ranging pinnipeds.  These data will provide new information that could improve rehabilitation formulas. Addition of metabolic hormones to formula may improve growth rate and therefore rehabilitated pup survival. 

 

Determining the Influence of Seasonality on the Metabolic Hormone Response to Nutritional Stress in Steller sea lions (Eumetopias jubatus)

In extreme cases, nutritional stress due to a reduction in the quantity or quality of prey consumed, may lead directly to emaciation and death, however, more subtle effects of nutritional stress may also result in decreased survival.  Nutritional stress can make animals vulnerable to disease and predation which may have substantial impacts on survival and population trends.  Between 1970 and 2000, Steller sea lions (Eumetopias jubatus) underwent an 80% reduction in population size and have not yet recovered.  Although the cause for the population decline and slow recovery of these populations is likely multifaceted, early evidence did support the hypothesis that nutritional stress contributed to the initial population decline; however, later research has been inconclusive. Limitations of this research, include poor knowledge of the mechanisms linking nutritional stress to changes in survival and reproductive rates.  Confounding our understanding of these mechanisms is the strong seasonality of normal Steller sea lion life history.  Studies have suggested that seasonal physiology of Steller sea lions may have a greater impact on body condition, one metric used to identify acute nutritional stress, than changes in prey quality.  Therefore the focus of this research is to evaluate the physiological mechanisms of the seasonal response of Steller sea lions to nutritional stress.  Understanding the seasonality of the physiological response to nutritional stress will allow us to better understand and quantify the impact in wild populations.